The 55-year-old former international defender left the experienced footballer out of match squad ahead of Greek Cup's away semi final against Atromitos on Wednesday, while executive director of the club Dusan Bajevic was also informed about his behavior.
The 29-year-old former player of Xerez was fined again for disciplinary issues during Stelios Manolas' previous spell, after home match against Iraklis in October.
The caretaker manager of AEK had a chat with Miguel Angel Cordero after Sunday's training and he asked him to apologize to his teammates for his reaction.